Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs154063 chr5:94597642 T/A 7.18E-5 172 0.3 17.5 14.63 KM Plot
PAAD rs1545357 chr2:70439404 C/T 0 178 15.37 17.4 1.03 KM Plot
PAAD rs1560636 chr5:127447987 A/G 0.000152 178 16.17 13.95 7.87 KM Plot
PAAD rs15656 chr2:70520846 C/T 0 178 15.37 17.4 1.03 KM Plot
PAAD rs1570957 chr10:2373667 G/A 0 172 0.4 13.53 16.03 KM Plot
PAAD rs1645773 chr19:23190534 A/G 8.57E-13 178 1.37 15.4 15.55 KM Plot
PAAD rs16823637 chr2:181608398 A/C 6.11E-5 174 15.55 16.6 4.68 KM Plot
PAAD rs16953970 chr15:78313230 C/T 0 178 15.43 17.78 1.03 KM Plot
PAAD rs16964766 chr17:27393310 G/A 3.28E-6 172 14.52 19.8 7.33 KM Plot
PAAD rs16964783 chr17:27415607 G/A 1.49E-5 174 14.37 19.63 5.03 KM Plot
PAAD rs17005409 chr2:70444998 G/A 0 178 15.33 18.43 1.03 KM Plot
PAAD rs17005420 chr2:70460396 C/T 0 178 15.33 18.43 1.03 KM Plot
PAAD rs17026081 chr1:216269176 A/G 0 178 0.4 17.27 14.63 KM Plot
PAAD rs17078881 chr6:117484127 A/G 9.27E-7 178 15.42 16.15 1.85 KM Plot
PAAD rs17141326 chr11:125545435 C/T 4.72E-5 178 16.03 11.6 4.1 KM Plot